Variant report

Variant	rs58642152
Chromosome Location	chr12:8961604-8961605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11047500	1.00[EUR][1000 genomes]
rs56094803	1.00[EUR][1000 genomes]
rs56837371	1.00[EUR][1000 genomes]
rs57676185	1.00[EUR][1000 genomes]
rs59824700	1.00[EUR][1000 genomes]
rs60331702	1.00[EUR][1000 genomes]
rs61054720	1.00[EUR][1000 genomes]
rs61431903	1.00[EUR][1000 genomes]
rs6487353	1.00[EUR][1000 genomes]
rs73036906	1.00[EUR][1000 genomes]
rs73038726	1.00[EUR][1000 genomes]
rs74059961	1.00[EUR][1000 genomes]
rs74059963	1.00[EUR][1000 genomes]
rs74059967	1.00[EUR][1000 genomes]
rs74059969	1.00[EUR][1000 genomes]
rs74059992	1.00[EUR][1000 genomes]
rs74061818	1.00[EUR][1000 genomes]
rs7960582	1.00[EUR][1000 genomes]
rs7968935	1.00[EUR][1000 genomes]
rs7972763	1.00[EUR][1000 genomes]
rs7975293	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34096	chr12:8927520-8968810	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3411524	chr12:8957209-8964599	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3379065	chr12:8957268-8965075	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8947600-8961800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr12:8949000-8962600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:8957000-8963000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:8957800-8962400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:8958600-8962000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:8959200-8961800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:8959400-8962000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:8960000-8972000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:8960200-8962000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:8960200-8962600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr12:8961000-8963400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:8961200-8962000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr12:8961400-8961800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:8961400-8962000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr12:8961400-8966600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr12:8961400-8969200	Weak transcription	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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