Variant report

Variant	rs58647844
Chromosome Location	chr3:46650509-46650510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46650273..46651172-chr3:46707945..46708857,6	MCF-7	breast:
2	chr3:46650273..46651172-chr3:46707945..46708857,7	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1520492	0.95[ASN][1000 genomes]
rs1520494	0.95[ASN][1000 genomes]
rs17078977	0.95[ASN][1000 genomes]
rs2176862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55740502	0.95[ASN][1000 genomes]
rs57417282	0.95[ASN][1000 genomes]
rs58599738	0.95[ASN][1000 genomes]
rs73075520	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73075538	0.94[ASN][1000 genomes]
rs73075539	0.94[ASN][1000 genomes]
rs73075540	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73075542	0.97[ASN][1000 genomes]
rs73075543	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73075555	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075569	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876738	chr3:46639048-46680063	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
2	chr3:46634800-46650800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:46645200-46650600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:46646200-46654000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:46646600-46650800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:46646600-46651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:46646800-46650800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:46648200-46652000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:46648200-46652000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:46648600-46650600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:46648600-46652000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:46649000-46650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr3:46649600-46650600	Weak transcription	Adipose Nuclei	Adipose
14	chr3:46649600-46650800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:46649600-46651000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:46649600-46651000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:46649800-46651200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:46650000-46651000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:46650000-46651400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:46650200-46650600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr3:46650200-46650600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:46650400-46650800	Enhancers	Hela-S3	cervix
23	chr3:46650400-46651800	Enhancers	HUES6 Cell Line	embryonic stem cell

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