Variant report

Variant	rs58651836
Chromosome Location	chr6:45582077-45582078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45469517..45472226-chr6:45580350..45582952,2	K562	blood:
2	chr6:45575229..45578385-chr6:45580116..45583808,5	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60089305	0.86[ASN][1000 genomes]
rs60902957	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45563800-45586200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:45576800-45585000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:45578000-45585200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:45578400-45582400	Weak transcription	Hela-S3	cervix
5	chr6:45579000-45587800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:45579800-45582600	Weak transcription	Fetal Lung	lung
7	chr6:45581000-45583200	Enhancers	NHEK	skin
8	chr6:45581000-45583800	Enhancers	HMEC	breast
9	chr6:45581200-45582600	Enhancers	NHDF-Ad	bronchial
10	chr6:45581200-45583200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:45581200-45583600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:45581400-45582200	Enhancers	Adipose Nuclei	Adipose
13	chr6:45581400-45583600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:45581600-45582200	Enhancers	Fetal Muscle Leg	muscle
15	chr6:45581800-45582600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:45581800-45583400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:45581800-45584600	Weak transcription	HSMM	muscle
18	chr6:45581800-45584800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:45582000-45584600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:45582000-45584800	Weak transcription	Osteobl	bone
21	chr6:45582000-45587200	Weak transcription	NHLF	lung

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