Variant report

Variant	rs60089305
Chromosome Location	chr6:45607202-45607203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56125920	0.83[ASN][1000 genomes]
rs58036867	0.83[AFR][1000 genomes]
rs58515711	0.81[ASN][1000 genomes]
rs58651836	0.86[ASN][1000 genomes]
rs58899441	0.88[ASN][1000 genomes]
rs59086975	0.88[ASN][1000 genomes]
rs60021834	0.88[ASN][1000 genomes]
rs60902957	1.00[ASN][1000 genomes]
rs73444596	0.83[ASN][1000 genomes]
rs73738524	0.88[ASN][1000 genomes]
rs7764716	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45595000-45607600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:45599200-45607400	Weak transcription	NHDF-Ad	bronchial
3	chr6:45599400-45607400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:45599400-45607600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:45599600-45607600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:45604600-45609800	Weak transcription	Fetal Intestine Small	intestine
7	chr6:45605000-45607400	Weak transcription	NHLF	lung
8	chr6:45605000-45608600	Enhancers	HSMM	muscle
9	chr6:45605600-45607800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:45605600-45607800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:45606000-45607400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:45606000-45607600	Weak transcription	Fetal Stomach	stomach
13	chr6:45606200-45607400	Weak transcription	Osteobl	bone
14	chr6:45606400-45607800	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:45606600-45607600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:45606600-45608400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:45607000-45608800	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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