Variant report

Variant	rs7764716
Chromosome Location	chr6:45585277-45585278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58036867	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58676176	1.00[AMR][1000 genomes]
rs60089305	0.91[AFR][1000 genomes]
rs60180065	1.00[AMR][1000 genomes]
rs73737413	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45563800-45586200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:45579000-45587800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:45582000-45587200	Weak transcription	NHLF	lung
4	chr6:45582600-45587000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:45582600-45587400	Weak transcription	NHDF-Ad	bronchial
6	chr6:45582800-45588200	Weak transcription	Fetal Lung	lung
7	chr6:45583200-45587600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:45583200-45587800	Weak transcription	NHEK	skin
9	chr6:45583400-45585400	Weak transcription	Hela-S3	cervix
10	chr6:45583400-45587400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:45583600-45587000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:45583600-45587600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:45584200-45586000	Enhancers	HMEC	breast
14	chr6:45584600-45588600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:45584600-45589000	Enhancers	HSMM	muscle
16	chr6:45584800-45585800	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:45584800-45586000	Enhancers	Osteobl	bone
18	chr6:45585000-45585600	Enhancers	HSMMtube	muscle
19	chr6:45585000-45585800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:45585000-45585800	Enhancers	NH-A	brain
21	chr6:45585200-45585800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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