Variant report

Variant	rs58663022
Chromosome Location	chr4:55123479-55123480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11937644	0.88[AFR][1000 genomes]
rs11942406	0.84[AFR][1000 genomes]
rs11944066	0.84[AFR][1000 genomes]
rs2412555	0.82[AFR][1000 genomes]
rs57017227	0.82[AFR][1000 genomes]
rs57947817	0.84[AFR][1000 genomes]
rs61427991	0.84[AFR][1000 genomes]
rs73149599	0.82[AFR][1000 genomes]
rs73151412	0.84[AFR][1000 genomes]
rs73151414	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1011682	chr4:55103816-55128149	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv997422	chr4:55104743-55132489	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1008497	chr4:55115691-55128149	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55105600-55124800	Weak transcription	Aorta	Aorta
2	chr4:55117200-55129600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:55118000-55129800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:55119000-55127200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:55119000-55138600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:55119400-55148000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:55120000-55124400	Enhancers	Placenta	Placenta
8	chr4:55120400-55126800	Weak transcription	Fetal Stomach	stomach
9	chr4:55120600-55129600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:55120800-55125800	Weak transcription	Fetal Lung	lung
11	chr4:55121000-55147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:55121000-55153200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:55121200-55125000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr4:55121200-55125400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:55121200-55130400	Weak transcription	Fetal Kidney	kidney
16	chr4:55121200-55133400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:55121200-55147200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr4:55121600-55125000	Weak transcription	Osteobl	bone
19	chr4:55121600-55128600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:55122200-55123600	Weak transcription	NHDF-Ad	bronchial
21	chr4:55122200-55124400	Weak transcription	NHLF	lung
22	chr4:55122200-55124800	Enhancers	Ovary	ovary
23	chr4:55122400-55125000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:55122400-55133400	Weak transcription	Fetal Muscle Leg	muscle
25	chr4:55122400-55142600	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr4:55123000-55123800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr4:55123200-55124000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:55123200-55124400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:55123400-55123600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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