Variant report

Variant	rs58667319
Chromosome Location	chr10:96524395-96524396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11568732	0.98[ASN][1000 genomes]
rs1409649	0.98[ASN][1000 genomes]
rs1409652	0.98[ASN][1000 genomes]
rs17442946	0.87[ASN][1000 genomes]
rs17521564	0.87[ASN][1000 genomes]
rs17878673	0.98[ASN][1000 genomes]
rs17879263	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17879992	0.98[ASN][1000 genomes]
rs17884832	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17885052	0.94[ASN][1000 genomes]
rs17885098	0.89[ASN][1000 genomes]
rs3814637	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3862008	0.94[ASN][1000 genomes]
rs4304697	0.98[ASN][1000 genomes]
rs4918717	0.87[ASN][1000 genomes]
rs55805503	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs56042914	0.87[ASN][1000 genomes]
rs56045700	0.83[ASN][1000 genomes]
rs56083530	0.98[ASN][1000 genomes]
rs57079861	0.98[ASN][1000 genomes]
rs57584668	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57822910	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs57957726	0.98[ASN][1000 genomes]
rs58269717	0.98[ASN][1000 genomes]
rs58349349	0.98[ASN][1000 genomes]
rs59826872	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60204155	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs60214908	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61153799	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs61249521	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs61888360	0.87[ASN][1000 genomes]
rs61888393	0.87[ASN][1000 genomes]
rs7076898	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7077029	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7088784	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7094920	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7101258	0.82[AFR][1000 genomes]
rs733115	0.94[ASN][1000 genomes]
rs74152352	0.98[ASN][1000 genomes]
rs74152356	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs74152357	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74152360	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74152362	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74152364	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs74152369	0.94[ASN][1000 genomes]
rs74154112	0.94[ASN][1000 genomes]
rs74154119	0.91[ASN][1000 genomes]
rs7893293	0.87[ASN][1000 genomes]
rs7895726	0.87[ASN][1000 genomes]
rs7896133	0.98[ASN][1000 genomes]
rs7901123	0.91[ASN][1000 genomes]
rs7907195	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7915727	0.91[ASN][1000 genomes]
rs7917253	0.87[ASN][1000 genomes]
rs7917617	0.98[ASN][1000 genomes]
rs9663112	0.98[ASN][1000 genomes]
rs9663214	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv934280	chr10:96401297-96540495	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv522538	chr10:96405329-96547463	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1047944	chr10:96407825-96563288	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1050653	chr10:96407825-96634161	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1037364	chr10:96435433-96634161	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3380017	chr10:96439904-96662339	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1046308	chr10:96441300-96633012	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv3344949	chr10:96443874-96666028	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv551955	chr10:96444249-96690371	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv551956	chr10:96446632-96632253	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv534171	chr10:96453830-96612764	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv551957	chr10:96454156-96626682	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1047505	chr10:96468200-96593083	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv540748	chr10:96468200-96593083	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv895901	chr10:96486504-96565650	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
17	nsv1044621	chr10:96495177-96546535	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
18	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
19	esv2761617	chr10:96495189-96548785	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
20	nsv551958	chr10:96495793-96548132	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
21	nsv869918	chr10:96496856-96575687	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
22	nsv1049558	chr10:96497884-96558711	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
23	nsv1046919	chr10:96497884-96559165	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
24	nsv1039270	chr10:96497884-96565616	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
25	nsv551959	chr10:96499710-96557336	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
26	esv2830208	chr10:96500106-96547463	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	nsv551960	chr10:96500106-96547463	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
28	nsv551961	chr10:96500106-96548132	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
29	nsv895902	chr10:96500106-96619025	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
30	esv2829935	chr10:96521249-96547463	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
31	esv3529538	chr10:96522848-96700018	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
32	esv3529539	chr10:96522848-96700018	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
33	esv3361914	chr10:96522865-96700024	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58667319	C10orf129	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96521800-96526000	Active TSS	Liver	Liver
2	chr10:96522000-96525600	Active TSS	Duodenum Mucosa	Duodenum
3	chr10:96523800-96524400	ZNF genes & repeats	Fetal Intestine Small	intestine
4	chr10:96524200-96525600	Enhancers	Placenta	Placenta

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