Variant report

Variant	rs61888393
Chromosome Location	chr10:96637090-96637091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11568732	0.89[ASN][1000 genomes]
rs1409649	0.89[ASN][1000 genomes]
rs1409652	0.89[ASN][1000 genomes]
rs17442946	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17521564	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17878673	0.89[ASN][1000 genomes]
rs17879263	0.89[ASN][1000 genomes]
rs17879992	0.89[ASN][1000 genomes]
rs17884832	0.89[ASN][1000 genomes]
rs17885052	0.93[ASN][1000 genomes]
rs17885098	0.83[ASN][1000 genomes]
rs1934963	0.86[EUR][1000 genomes]
rs28371677	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3814637	0.89[ASN][1000 genomes]
rs3862008	0.93[ASN][1000 genomes]
rs4086116	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4304697	0.89[ASN][1000 genomes]
rs4430441	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4917639	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918717	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4918797	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4918798	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55805503	0.89[ASN][1000 genomes]
rs56042914	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56045700	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56233220	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57079861	0.89[ASN][1000 genomes]
rs57584668	0.89[ASN][1000 genomes]
rs57822910	0.89[ASN][1000 genomes]
rs57957726	0.89[ASN][1000 genomes]
rs58269717	0.89[ASN][1000 genomes]
rs58349349	0.89[ASN][1000 genomes]
rs58667319	0.87[ASN][1000 genomes]
rs59826872	0.89[ASN][1000 genomes]
rs60204155	0.89[ASN][1000 genomes]
rs60214908	0.89[ASN][1000 genomes]
rs61153799	0.89[ASN][1000 genomes]
rs61249521	0.87[ASN][1000 genomes]
rs61886768	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61886769	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61886778	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61886804	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61888360	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076898	0.89[ASN][1000 genomes]
rs7077029	0.89[ASN][1000 genomes]
rs7088784	0.89[ASN][1000 genomes]
rs7094920	0.89[ASN][1000 genomes]
rs733115	0.93[ASN][1000 genomes]
rs74152352	0.89[ASN][1000 genomes]
rs74152356	0.91[ASN][1000 genomes]
rs74152357	0.89[ASN][1000 genomes]
rs74152360	0.89[ASN][1000 genomes]
rs74152362	0.89[ASN][1000 genomes]
rs74152364	0.89[ASN][1000 genomes]
rs74152369	0.93[ASN][1000 genomes]
rs74154112	0.93[ASN][1000 genomes]
rs74154119	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7893293	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7895726	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896133	0.89[ASN][1000 genomes]
rs7901123	0.96[ASN][1000 genomes]
rs7907195	0.89[ASN][1000 genomes]
rs7910432	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7915727	0.96[ASN][1000 genomes]
rs7917253	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917617	0.89[ASN][1000 genomes]
rs9332172	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9332220	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9663112	0.89[ASN][1000 genomes]
rs9663214	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3380017	chr10:96439904-96662339	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3344949	chr10:96443874-96666028	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv551955	chr10:96444249-96690371	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv3529538	chr10:96522848-96700018	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3529539	chr10:96522848-96700018	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3361914	chr10:96522865-96700024	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv523259	chr10:96534584-96693727	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1052578	chr10:96538082-96641949	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv3336672	chr10:96543010-96711519	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1037973	chr10:96563228-96711744	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv1047782	chr10:96581094-96718479	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	esv1818389	chr10:96620304-96675513	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96602800-96639400	Weak transcription	Gastric	stomach
2	chr10:96619200-96652200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:96619400-96638800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:96623000-96649600	Weak transcription	Fetal Intestine Large	intestine
5	chr10:96636200-96638600	Weak transcription	Liver	Liver

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