Variant report

Variant	rs58674236
Chromosome Location	chr10:118921025-118921026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74159041	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118919200-118921800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
2	chr10:118919400-118922000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr10:118919400-118922000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr10:118919600-118921800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr10:118919600-118922000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr10:118920000-118922000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:118920200-118922400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:118921000-118921200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr10:118921000-118921200	Bivalent Enhancer	Brain Germinal Matrix	brain
10	chr10:118921000-118921200	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:118921000-118921400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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