Variant report

Variant	rs74159041
Chromosome Location	chr10:118919210-118919211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35664484	1.00[AMR][1000 genomes]
rs58674236	0.83[AFR][1000 genomes]
rs73385275	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118918200-118920400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
2	chr10:118918400-118919400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr10:118918600-118920000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:118918800-118919400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
5	chr10:118918800-118919600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr10:118919000-118919400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:118919200-118919400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr10:118919200-118919600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr10:118919200-118919600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
10	chr10:118919200-118919800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:118919200-118920000	Bivalent Enhancer	Brain Germinal Matrix	brain
12	chr10:118919200-118920400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr10:118919200-118920600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr10:118919200-118921800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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