Variant report

Variant	rs73385275
Chromosome Location	chr10:118892639-118892640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17095423	1.00[EUR][1000 genomes]
rs17095425	1.00[EUR][1000 genomes]
rs17095640	1.00[EUR][1000 genomes]
rs17095657	1.00[EUR][1000 genomes]
rs17095668	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17095683	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35664484	1.00[AMR][1000 genomes]
rs57389221	1.00[EUR][1000 genomes]
rs57983429	1.00[EUR][1000 genomes]
rs60202099	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6585421	1.00[EUR][1000 genomes]
rs74159041	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv825577	chr10:118887637-118905958	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118890000-118894200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
2	chr10:118890400-118899000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr10:118890600-118892800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr10:118890600-118894600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr10:118890600-118894800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
6	chr10:118890800-118893400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:118890800-118893600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr10:118890800-118893600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr10:118890800-118894600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
10	chr10:118890800-118894600	Bivalent Enhancer	Fetal Muscle Leg	muscle
11	chr10:118890800-118894600	Bivalent Enhancer	Fetal Stomach	stomach
12	chr10:118891000-118894400	Bivalent/Poised TSS	NHEK	skin
13	chr10:118891200-118893600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:118891400-118892800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
15	chr10:118891400-118893000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
16	chr10:118891400-118893600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:118891400-118893600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:118891600-118893600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:118891600-118893600	Bivalent Enhancer	Fetal Intestine Small	intestine
20	chr10:118891800-118893600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:118891800-118894600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
22	chr10:118892000-118892800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr10:118892000-118893000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:118892000-118893400	Bivalent Enhancer	Liver	Liver
25	chr10:118892000-118893400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
26	chr10:118892200-118892800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
27	chr10:118892200-118892800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
28	chr10:118892200-118892800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:118892200-118892800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
30	chr10:118892200-118892800	Bivalent Enhancer	Lung	lung
31	chr10:118892200-118892800	Bivalent Enhancer	Right Ventricle	heart
32	chr10:118892200-118893000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:118892200-118893000	Bivalent Enhancer	Brain Hippocampus Middle	brain
34	chr10:118892200-118893200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:118892200-118893200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:118892200-118893400	Bivalent Enhancer	Colon Smooth Muscle	Colon
37	chr10:118892200-118894200	Bivalent/Poised TSS	Fetal Brain Female	brain
38	chr10:118892200-118894600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr10:118892400-118892800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr10:118892400-118893000	Weak transcription	Right Atrium	heart
41	chr10:118892400-118893000	Bivalent Enhancer	HUVEC	blood vessel
42	chr10:118892400-118893200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
43	chr10:118892400-118893200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
44	chr10:118892400-118893400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:118892400-118893600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:118892400-118893600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:118892400-118893600	Bivalent Enhancer	Fetal Heart	heart
48	chr10:118892400-118894200	Bivalent Enhancer	Brain Cingulate Gyrus	brain
49	chr10:118892600-118892800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:118892600-118892800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links