Variant report

Variant	rs60202099
Chromosome Location	chr10:118856775-118856776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17095423	1.00[EUR][1000 genomes]
rs17095425	1.00[EUR][1000 genomes]
rs17095640	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17095657	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095668	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17095683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57389221	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57983429	1.00[EUR][1000 genomes]
rs6585421	1.00[EUR][1000 genomes]
rs73385275	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv975788	chr10:118854474-118856796	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118853800-118857200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:118854000-118857200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:118854000-118857400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:118855000-118856800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:118855000-118860600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:118855600-118857400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:118855600-118857600	Enhancers	Brain Germinal Matrix	brain
8	chr10:118856200-118857000	Enhancers	Fetal Brain Male	brain
9	chr10:118856400-118860800	Weak transcription	Brain Substantia Nigra	brain
10	chr10:118856600-118857400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:118856600-118860800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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