The 2.0 version of rSNPBase

Variant report

Variant rs57983429
Chromosome Location chr10:118721681-118721682
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:118652000-118736200 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr10:118699200-118724200 Weak transcription Fetal Intestine Small intestine
3 chr10:118699200-118740600 Weak transcription Sigmoid Colon Sigmoid Colon
4 chr10:118699200-118748200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr10:118700000-118736800 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr10:118701000-118733400 Weak transcription Fetal Kidney kidney
7 chr10:118702400-118727200 Weak transcription Stomach Mucosa stomach
8 chr10:118703400-118737000 Weak transcription Aorta Aorta
9 chr10:118703600-118740000 Weak transcription Duodenum Mucosa Duodenum
10 chr10:118703600-118752200 Weak transcription Gastric stomach
11 chr10:118704200-118726600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr10:118708000-118725800 Weak transcription iPS-15b Cell Line embryonic stem cell
13 chr10:118708000-118726600 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr10:118708000-118735600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr10:118708200-118730800 Weak transcription iPS-20b Cell Line embryonic stem cell
16 chr10:118708200-118733200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
17 chr10:118708200-118734000 Weak transcription HSMM muscle
18 chr10:118708200-118744000 Weak transcription K562 blood
19 chr10:118708600-118736200 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr10:118710800-118731000 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr10:118711000-118724600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr10:118711000-118724600 Weak transcription HepG2 liver
23 chr10:118711000-118727000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr10:118711000-118735600 Weak transcription Pancreas Pancrea
25 chr10:118711000-118739600 Weak transcription Fetal Stomach stomach
26 chr10:118711200-118724600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr10:118711200-118724600 Weak transcription Fetal Intestine Large intestine
28 chr10:118711200-118732600 Weak transcription HUVEC blood vessel
29 chr10:118711200-118740000 Weak transcription Adipose Nuclei Adipose
30 chr10:118711800-118732200 Weak transcription Hela-S3 cervix
31 chr10:118713000-118732800 Weak transcription HMEC breast
32 chr10:118713600-118726600 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr10:118713800-118724800 Weak transcription Breast Myoepithelial Primary Cells Breast
34 chr10:118713800-118732800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
35 chr10:118714200-118723200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr10:118714400-118724600 Weak transcription Liver Liver
37 chr10:118714400-118727800 Weak transcription NHEK skin
38 chr10:118716000-118723400 Enhancers Brain Substantia Nigra brain
39 chr10:118718600-118721800 Enhancers Brain Hippocampus Middle brain
40 chr10:118719600-118723400 Weak transcription Primary monocytes fromperipheralblood blood
41 chr10:118719600-118723600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr10:118719800-118722400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr10:118719800-118725000 Weak transcription A549 lung
44 chr10:118720000-118722200 Enhancers Fetal Brain Female brain
45 chr10:118720600-118724000 Enhancers Fetal Brain Male brain
46 chr10:118720800-118722200 Enhancers Cortex derived primary cultured neurospheres brain
47 chr10:118720800-118723000 Weak transcription Brain Germinal Matrix brain
48 chr10:118721000-118722200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
49 chr10:118721000-118722200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
50 chr10:118721000-118722400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015