Variant report

Variant	rs17095668
Chromosome Location	chr10:118852372-118852373
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17095423	0.90[JPT][hapmap];1.00[EUR][1000 genomes]
rs17095425	1.00[EUR][1000 genomes]
rs17095640	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17095657	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17095683	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57389221	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57983429	1.00[EUR][1000 genomes]
rs60202099	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6585421	1.00[EUR][1000 genomes]
rs73385275	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118851200-118854000	Enhancers	Brain Hippocampus Middle	brain
2	chr10:118851200-118854200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:118851200-118855200	Enhancers	Brain Germinal Matrix	brain
4	chr10:118851400-118854400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:118851600-118852800	Enhancers	Brain Angular Gyrus	brain
6	chr10:118851800-118852400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:118851800-118853800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:118852000-118852400	Weak transcription	Brain Substantia Nigra	brain
9	chr10:118852200-118852400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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