Variant report

Variant	rs58678904
Chromosome Location	chr4:87154422-87154423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10030225	0.83[EUR][1000 genomes]
rs11941150	1.00[EUR][1000 genomes]
rs12331353	1.00[EUR][1000 genomes]
rs12331772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28536101	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28613556	1.00[EUR][1000 genomes]
rs28804774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55732338	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57237885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59666499	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60932095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6847635	1.00[EUR][1000 genomes]
rs72874014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73834264	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv515925	chr4:87142248-87165758	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763374	chr4:87151085-87184332	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87142600-87157800	Weak transcription	Fetal Stomach	stomach
2	chr4:87144000-87154800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:87145200-87154600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:87149200-87186200	Weak transcription	Ovary	ovary
5	chr4:87149400-87154800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:87153000-87155000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:87153200-87165200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:87153800-87155200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:87154000-87154600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:87154000-87155000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:87154000-87155000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:87154000-87155200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:87154000-87155200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:87154000-87155400	Enhancers	HMEC	breast
15	chr4:87154000-87155600	Enhancers	NHEK	skin
16	chr4:87154200-87154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:87154200-87155200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr4:87154200-87155400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:87154400-87155000	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:87154400-87155200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:87154400-87155200	Enhancers	Osteobl	bone
22	chr4:87154400-87155400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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