Variant report

Variant	rs58680278
Chromosome Location	chr5:68179454-68179455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68174097..68175600-chr5:68177826..68180032,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55745701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56292773	1.00[ASN][1000 genomes]
rs58781739	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs59344077	1.00[ASN][1000 genomes]
rs59618733	1.00[ASN][1000 genomes]
rs60045456	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61034730	1.00[ASN][1000 genomes]
rs6449978	1.00[ASN][1000 genomes]
rs6862885	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6883147	1.00[ASN][1000 genomes]
rs6884055	1.00[ASN][1000 genomes]
rs73121030	1.00[ASN][1000 genomes]
rs73770577	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7712243	1.00[ASN][1000 genomes]
rs7720166	1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68176800-68182400	Weak transcription	NHDF-Ad	bronchial
2	chr5:68178200-68180600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:68178200-68181000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:68178600-68179600	Enhancers	Primary T cells from cord blood	blood
5	chr5:68178800-68180200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr5:68178800-68180400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:68178800-68180800	Enhancers	Dnd41	blood
8	chr5:68179000-68179600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:68179000-68180600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:68179000-68180600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:68179000-68180600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:68179000-68180800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:68179000-68181000	Enhancers	Fetal Thymus	thymus
14	chr5:68179000-68181200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr5:68179200-68179600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr5:68179200-68180200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr5:68179200-68180400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr5:68179200-68180400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr5:68179200-68181400	Enhancers	Brain Anterior Caudate	brain
20	chr5:68179400-68179600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:68179400-68179800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr5:68179400-68179800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr5:68179400-68179800	Enhancers	Brain Cingulate Gyrus	brain
24	chr5:68179400-68179800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr5:68179400-68180000	Enhancers	Brain Substantia Nigra	brain
26	chr5:68179400-68180000	Enhancers	Thymus	Thymus
27	chr5:68179400-68180400	Enhancers	Brain Angular Gyrus	brain

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