Variant report
| Variant | rs6883147 |
|---|---|
| Chromosome Location | chr5:68176952-68176953 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:51)
| rs_ID | r2[population] |
|---|---|
| rs16898216 | 1.00[EUR][1000 genomes] |
| rs16898225 | 1.00[EUR][1000 genomes] |
| rs16898237 | 1.00[EUR][1000 genomes] |
| rs16898243 | 1.00[EUR][1000 genomes] |
| rs16898397 | 1.00[EUR][1000 genomes] |
| rs28502210 | 1.00[EUR][1000 genomes] |
| rs55745701 | 1.00[ASN][1000 genomes] |
| rs56292773 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57630507 | 1.00[EUR][1000 genomes] |
| rs58680278 | 1.00[ASN][1000 genomes] |
| rs59023483 | 1.00[EUR][1000 genomes] |
| rs59344077 | 1.00[ASN][1000 genomes] |
| rs59618733 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59868150 | 1.00[EUR][1000 genomes] |
| rs60050075 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60121998 | 1.00[EUR][1000 genomes] |
| rs61034730 | 1.00[ASN][1000 genomes] |
| rs61600663 | 1.00[EUR][1000 genomes] |
| rs6449976 | 1.00[EUR][1000 genomes] |
| rs6449978 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6449979 | 1.00[EUR][1000 genomes] |
| rs6862265 | 1.00[EUR][1000 genomes] |
| rs6862885 | 1.00[ASN][1000 genomes] |
| rs6867202 | 1.00[EUR][1000 genomes] |
| rs6867735 | 1.00[EUR][1000 genomes] |
| rs6876368 | 1.00[EUR][1000 genomes] |
| rs6878268 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6883399 | 1.00[EUR][1000 genomes] |
| rs6884055 | 1.00[ASN][1000 genomes] |
| rs6897175 | 1.00[EUR][1000 genomes] |
| rs73114938 | 1.00[EUR][1000 genomes] |
| rs73114940 | 1.00[EUR][1000 genomes] |
| rs73114961 | 1.00[EUR][1000 genomes] |
| rs73114965 | 1.00[EUR][1000 genomes] |
| rs73114968 | 1.00[EUR][1000 genomes] |
| rs73114969 | 1.00[EUR][1000 genomes] |
| rs73114971 | 1.00[EUR][1000 genomes] |
| rs73121030 | 1.00[ASN][1000 genomes] |
| rs73770326 | 1.00[EUR][1000 genomes] |
| rs73770327 | 1.00[EUR][1000 genomes] |
| rs73775816 | 1.00[EUR][1000 genomes] |
| rs73775825 | 1.00[EUR][1000 genomes] |
| rs73775832 | 1.00[EUR][1000 genomes] |
| rs73775842 | 1.00[EUR][1000 genomes] |
| rs7708858 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7712243 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7717178 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7717340 | 1.00[EUR][1000 genomes] |
| rs7720166 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7727281 | 1.00[EUR][1000 genomes] |
| rs7735079 | 1.00[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:68172400-68178200 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 2 | chr5:68176000-68177000 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr5:68176800-68182400 | Weak transcription | NHDF-Ad | bronchial |
