Variant report
| Variant | rs6897175 |
|---|---|
| Chromosome Location | chr5:68165242-68165243 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | SPI1 | chr5:68165032-68165648 | GM12878 | blood: | n/a | n/a |
| 2 | SPI1 | chr5:68165221-68165370 | K562 | blood: | n/a | n/a |
| 3 | SPI1 | chr5:68165131-68165494 | GM12891 | blood: | n/a | n/a |
| 4 | SPI1 | chr5:68165212-68165385 | K562 | blood: | n/a | n/a |
| 5 | SPI1 | chr5:68165159-68165431 | GM12878 | blood: | n/a | n/a |
| 6 | SPI1 | chr5:68165126-68165399 | GM12891 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000212249 | TF binding region |
rSNPs within LD-proxies of this variant (count:43)
| rs_ID | r2[population] |
|---|---|
| rs16898216 | 1.00[EUR][1000 genomes] |
| rs16898225 | 1.00[EUR][1000 genomes] |
| rs16898237 | 1.00[EUR][1000 genomes] |
| rs16898243 | 1.00[EUR][1000 genomes] |
| rs16898397 | 1.00[EUR][1000 genomes] |
| rs28502210 | 1.00[EUR][1000 genomes] |
| rs56292773 | 1.00[EUR][1000 genomes] |
| rs57630507 | 1.00[EUR][1000 genomes] |
| rs59023483 | 1.00[EUR][1000 genomes] |
| rs59618733 | 1.00[EUR][1000 genomes] |
| rs59868150 | 1.00[EUR][1000 genomes] |
| rs60050075 | 1.00[EUR][1000 genomes] |
| rs60121998 | 1.00[EUR][1000 genomes] |
| rs61600663 | 1.00[EUR][1000 genomes] |
| rs6449976 | 1.00[EUR][1000 genomes] |
| rs6449978 | 1.00[EUR][1000 genomes] |
| rs6449979 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6862265 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6867202 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6867735 | 1.00[EUR][1000 genomes] |
| rs6876368 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6878268 | 1.00[EUR][1000 genomes] |
| rs6883147 | 1.00[EUR][1000 genomes] |
| rs6883399 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73114938 | 1.00[EUR][1000 genomes] |
| rs73114940 | 1.00[EUR][1000 genomes] |
| rs73114961 | 1.00[EUR][1000 genomes] |
| rs73114965 | 1.00[EUR][1000 genomes] |
| rs73114968 | 1.00[EUR][1000 genomes] |
| rs73114969 | 1.00[EUR][1000 genomes] |
| rs73114971 | 1.00[EUR][1000 genomes] |
| rs73770326 | 1.00[EUR][1000 genomes] |
| rs73770327 | 1.00[EUR][1000 genomes] |
| rs73775816 | 1.00[EUR][1000 genomes] |
| rs73775825 | 1.00[EUR][1000 genomes] |
| rs7708858 | 1.00[EUR][1000 genomes] |
| rs7712243 | 1.00[EUR][1000 genomes] |
| rs7713475 | 0.86[AFR][1000 genomes] |
| rs7717178 | 1.00[EUR][1000 genomes] |
| rs7717340 | 1.00[EUR][1000 genomes] |
| rs7720166 | 1.00[EUR][1000 genomes] |
| rs7727281 | 1.00[EUR][1000 genomes] |
| rs7735079 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
