Variant report

Variant	rs6883399
Chromosome Location	chr5:68175114-68175115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68174097..68175600-chr5:68177826..68180032,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs16898216	1.00[EUR][1000 genomes]
rs16898225	1.00[EUR][1000 genomes]
rs16898237	1.00[EUR][1000 genomes]
rs16898243	1.00[EUR][1000 genomes]
rs16898397	1.00[EUR][1000 genomes]
rs28502210	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	1.00[EUR][1000 genomes]
rs59868150	1.00[EUR][1000 genomes]
rs60050075	1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449976	1.00[EUR][1000 genomes]
rs6449978	1.00[EUR][1000 genomes]
rs6449979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862265	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867202	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878268	1.00[EUR][1000 genomes]
rs6883147	1.00[EUR][1000 genomes]
rs6897175	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114938	1.00[EUR][1000 genomes]
rs73114940	1.00[EUR][1000 genomes]
rs73114961	1.00[EUR][1000 genomes]
rs73114965	1.00[EUR][1000 genomes]
rs73114968	1.00[EUR][1000 genomes]
rs73114969	1.00[EUR][1000 genomes]
rs73114971	1.00[EUR][1000 genomes]
rs73770326	1.00[EUR][1000 genomes]
rs73770327	1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs73775832	1.00[EUR][1000 genomes]
rs7708858	1.00[EUR][1000 genomes]
rs7712243	1.00[EUR][1000 genomes]
rs7713475	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7717178	1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68172400-68178200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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