Variant report

Variant	rs7708858
Chromosome Location	chr5:68169202-68169203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:68169136-68169461	SK-N-SH_RA	brain:	n/a	n/a
2	JUND	chr5:68168883-68169226	HepG2	liver:	n/a	n/a
3	EP300	chr5:68167341-68169469	SK-N-SH	brain:	n/a	chr5:68167669-68167679
4	KAP1	chr5:68167718-68169316	U2OS	brain:	n/a	n/a
5	KAP1	chr5:68167785-68169231	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000212249	TF binding region

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs16898216	1.00[EUR][1000 genomes]
rs16898225	1.00[EUR][1000 genomes]
rs16898237	1.00[EUR][1000 genomes]
rs16898243	1.00[EUR][1000 genomes]
rs16898397	1.00[EUR][1000 genomes]
rs28502210	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59868150	1.00[EUR][1000 genomes]
rs60050075	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449976	1.00[EUR][1000 genomes]
rs6449978	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6449979	1.00[EUR][1000 genomes]
rs6862265	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6867202	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	1.00[EUR][1000 genomes]
rs6878268	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883147	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6883399	1.00[EUR][1000 genomes]
rs6897175	1.00[EUR][1000 genomes]
rs73114938	1.00[EUR][1000 genomes]
rs73114940	1.00[EUR][1000 genomes]
rs73114961	1.00[EUR][1000 genomes]
rs73114965	1.00[EUR][1000 genomes]
rs73114968	1.00[EUR][1000 genomes]
rs73114969	1.00[EUR][1000 genomes]
rs73114971	1.00[EUR][1000 genomes]
rs73770326	1.00[EUR][1000 genomes]
rs73770327	1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs7712243	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7717178	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	1.00[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68168800-68170600	Weak transcription	Primary T cells from cord blood	blood
2	chr5:68169000-68169400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links