Variant report

Variant	rs6862265
Chromosome Location	chr5:68167979-68167980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr5:68167753-68168489	SH-SY5Y	brain:	n/a	n/a
2	REST	chr5:68167861-68168051	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr5:68167675-68168591	SK-N-SH	brain:	n/a	n/a
4	GATA3	chr5:68167416-68168292	SH-SY5Y	brain:	n/a	n/a
5	EP300	chr5:68167802-68168440	SK-N-SH_RA	brain:	n/a	n/a
6	EP300	chr5:68167341-68169469	SK-N-SH	brain:	n/a	chr5:68167669-68167679
7	TEAD4	chr5:68167916-68168453	SK-N-SH	brain:	n/a	n/a
8	KAP1	chr5:68167718-68169316	U2OS	brain:	n/a	n/a
9	ATF2	chr5:68167974-68168423	H1-hESC	embryonic stem cell:	n/a	n/a
10	EP300	chr5:68167788-68168489	SK-N-SH_RA	brain:	n/a	n/a
11	POLR2A	chr5:68167883-68168406	SK-N-SH	brain:	n/a	n/a
12	JUND	chr5:68167647-68168611	SK-N-SH	brain:	n/a	chr5:68168198-68168207
13	RAD21	chr5:68167811-68168405	SK-N-SH_RA	brain:	n/a	n/a
14	GATA3	chr5:68167636-68168405	SK-N-SH	brain:	n/a	n/a
15	PBX3	chr5:68167938-68168409	SK-N-SH	brain:	n/a	n/a
16	TCF12	chr5:68167764-68168566	SK-N-SH	brain:	n/a	n/a
17	KAP1	chr5:68167785-68169231	HEK293	kidney:	n/a	n/a
18	PBX3	chr5:68167786-68168447	SK-N-SH	brain:	n/a	n/a
19	EP300	chr5:68167733-68168387	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000212249	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs16898216	1.00[EUR][1000 genomes]
rs16898225	1.00[EUR][1000 genomes]
rs16898237	1.00[EUR][1000 genomes]
rs16898243	1.00[EUR][1000 genomes]
rs16898397	1.00[EUR][1000 genomes]
rs28502210	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	1.00[EUR][1000 genomes]
rs59868150	1.00[EUR][1000 genomes]
rs60050075	1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449976	1.00[EUR][1000 genomes]
rs6449978	1.00[EUR][1000 genomes]
rs6449979	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867202	0.92[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878268	1.00[EUR][1000 genomes]
rs6883147	1.00[EUR][1000 genomes]
rs6883399	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897175	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114938	1.00[EUR][1000 genomes]
rs73114940	1.00[EUR][1000 genomes]
rs73114961	1.00[EUR][1000 genomes]
rs73114965	1.00[EUR][1000 genomes]
rs73114968	1.00[EUR][1000 genomes]
rs73114969	1.00[EUR][1000 genomes]
rs73114971	1.00[EUR][1000 genomes]
rs73770326	1.00[EUR][1000 genomes]
rs73770327	1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs7708858	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7712243	1.00[EUR][1000 genomes]
rs7713475	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7717178	1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68167400-68168600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr5:68167800-68168400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:68167800-68168400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:68167800-68168400	Enhancers	Ovary	ovary
5	chr5:68167800-68168600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:68167800-68168600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr5:68167800-68168800	Enhancers	HUES6 Cell Line	embryonic stem cell

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