Variant report

Variant	rs6449979
Chromosome Location	chr5:68179110-68179111
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68174097..68175600-chr5:68177826..68180032,2	MCF-7	breast:

rs_ID	r²[population]
rs16898216	1.00[EUR][1000 genomes]
rs16898225	1.00[EUR][1000 genomes]
rs16898237	1.00[EUR][1000 genomes]
rs16898243	1.00[EUR][1000 genomes]
rs16898397	1.00[EUR][1000 genomes]
rs28502210	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	1.00[EUR][1000 genomes]
rs59868150	1.00[EUR][1000 genomes]
rs60050075	1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449976	1.00[EUR][1000 genomes]
rs6449978	1.00[EUR][1000 genomes]
rs6862265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867202	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6878268	1.00[EUR][1000 genomes]
rs6883147	1.00[EUR][1000 genomes]
rs6883399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6897175	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114938	1.00[EUR][1000 genomes]
rs73114940	1.00[EUR][1000 genomes]
rs73114961	1.00[EUR][1000 genomes]
rs73114965	1.00[EUR][1000 genomes]
rs73114968	1.00[EUR][1000 genomes]
rs73114969	1.00[EUR][1000 genomes]
rs73114971	1.00[EUR][1000 genomes]
rs73770326	1.00[EUR][1000 genomes]
rs73770327	1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs73775832	1.00[EUR][1000 genomes]
rs73775842	1.00[EUR][1000 genomes]
rs7708858	1.00[EUR][1000 genomes]
rs7712243	1.00[EUR][1000 genomes]
rs7713475	0.81[AMR][1000 genomes]
rs7717178	1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68176800-68182400	Weak transcription	NHDF-Ad	bronchial
2	chr5:68178200-68180600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:68178200-68181000	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr5:68178600-68179600	Enhancers	Primary T cells from cord blood	blood
5	chr5:68178800-68180200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr5:68178800-68180400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:68178800-68180800	Enhancers	Dnd41	blood
8	chr5:68179000-68179600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:68179000-68180600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr5:68179000-68180600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:68179000-68180600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr5:68179000-68180800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:68179000-68181000	Enhancers	Fetal Thymus	thymus
14	chr5:68179000-68181200	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links