Variant report

Variant	rs73114968
Chromosome Location	chr5:68342588-68342589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr5:68342106-68342641	K562	blood:	n/a	chr5:68342383-68342398 chr5:68342385-68342394 chr5:68342340-68342356 chr5:68342388-68342399 chr5:68342381-68342395 chr5:68342384-68342394 chr5:68342378-68342398 chr5:68342341-68342355
2	CUX1	chr5:68342262-68342724	K562	blood:	n/a	n/a
3	CBX3	chr5:68342111-68342599	K562	blood:	n/a	n/a
4	BACH1	chr5:68342108-68342697	K562	blood:	n/a	n/a
5	RCOR1	chr5:68342198-68342679	K562	blood:	n/a	n/a
6	JUND	chr5:68342189-68342615	K562	blood:	n/a	chr5:68342383-68342393 chr5:68342382-68342393 chr5:68342384-68342392 chr5:68342382-68342394 chr5:68342383-68342393 chr5:68342383-68342393
7	BACH1	chr5:68342131-68342588	H1-hESC	embryonic stem cell:	n/a	n/a
8	IRF1	chr5:68342203-68342613	K562	blood:	n/a	n/a
9	MAFF	chr5:68342059-68342690	K562	blood:	n/a	chr5:68342382-68342400 chr5:68342335-68342353 chr5:68342381-68342395 chr5:68342341-68342355

No.	Distal block	Cell Line	Cell type
1	chr5:68342410..68343964-chr5:68350073..68352627,2	K562	blood:
2	chr5:68320167..68322088-chr5:68342197..68344022,2	K562	blood:
3	chr5:68321118..68323616-chr5:68341647..68343951,2	MCF-7	breast:
4	chr5:68341693..68343908-chr5:68389795..68391335,2	K562	blood:

Variant related genes	Relation type
ENSG00000250237	TF binding region
ENSG00000145740	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs16898397	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1873431	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57402724	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs58381452	1.00[EUR][1000 genomes]
rs58742544	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	1.00[EUR][1000 genomes]
rs59776629	1.00[EUR][1000 genomes]
rs59868150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60050075	1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61244656	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449978	1.00[EUR][1000 genomes]
rs6449979	1.00[EUR][1000 genomes]
rs6861518	1.00[EUR][1000 genomes]
rs6862265	1.00[EUR][1000 genomes]
rs6867202	1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	1.00[EUR][1000 genomes]
rs6878268	1.00[EUR][1000 genomes]
rs6883147	1.00[EUR][1000 genomes]
rs6883399	1.00[EUR][1000 genomes]
rs6893921	1.00[EUR][1000 genomes]
rs6897175	1.00[EUR][1000 genomes]
rs73114938	1.00[EUR][1000 genomes]
rs73114940	1.00[EUR][1000 genomes]
rs73114961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs73775832	1.00[EUR][1000 genomes]
rs73775842	1.00[EUR][1000 genomes]
rs7708858	1.00[EUR][1000 genomes]
rs7712243	1.00[EUR][1000 genomes]
rs7717178	1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	1.00[EUR][1000 genomes]
rs7725200	1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	1.00[EUR][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68339400-68345600	Weak transcription	HSMMtube	muscle
2	chr5:68339800-68344800	Weak transcription	HepG2	liver
3	chr5:68340000-68345600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr5:68341600-68342600	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:68342200-68342600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:68342200-68342600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:68342200-68342600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:68342200-68342600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr5:68342200-68342600	Enhancers	Liver	Liver
10	chr5:68342200-68342600	Flanking Active TSS	K562	blood
11	chr5:68342200-68342800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:68342200-68342800	Enhancers	A549	lung
13	chr5:68342200-68342800	Enhancers	Hela-S3	cervix

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