Variant report

Variant	rs73114940
Chromosome Location	chr5:68326867-68326868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr5:68325287-68327472	SK-N-SH	brain:	n/a	chr5:68325327-68325341 chr5:68325331-68325340
2	GATA3	chr5:68326333-68326982	SH-SY5Y	brain:	n/a	n/a
3	RFX5	chr5:68325442-68327442	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr5:68326453-68326897	H1-neurons	neurons:	n/a	n/a
5	GATA3	chr5:68326408-68326885	SK-N-SH	brain:	n/a	n/a
6	JUND	chr5:68326468-68326887	K562	blood:	n/a	chr5:68326650-68326659
7	JUN	chr5:68326178-68327018	K562	blood:	n/a	chr5:68326650-68326659 chr5:68326646-68326659
8	GATA3	chr5:68326429-68326951	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr5:68326442-68326992	H1-neurons	neurons:	n/a	n/a
10	KAP1	chr5:68326565-68326965	HEK293	kidney:	n/a	n/a
11	MXI1	chr5:68325964-68327355	SK-N-SH	brain:	n/a	n/a
12	REST	chr5:68326432-68327037	H1-neurons	neurons:	n/a	n/a
13	MYC	chr5:68326533-68326904	K562	blood:	n/a	n/a
14	REST	chr5:68326179-68327149	H1-neurons	neurons:	n/a	n/a
15	GATA2	chr5:68326460-68326948	SH-SY5Y	brain:	n/a	n/a
16	JUND	chr5:68326232-68327046	SK-N-SH	brain:	n/a	chr5:68326650-68326659

Variant related genes	Relation type
ENSG00000249352	TF binding region

rs_ID	r²[population]
rs16898237	1.00[EUR][1000 genomes]
rs16898243	1.00[EUR][1000 genomes]
rs16898397	1.00[EUR][1000 genomes]
rs1873431	1.00[EUR][1000 genomes]
rs28502210	1.00[EUR][1000 genomes]
rs56292773	1.00[EUR][1000 genomes]
rs57402724	1.00[EUR][1000 genomes]
rs57630507	1.00[EUR][1000 genomes]
rs58381452	1.00[EUR][1000 genomes]
rs58742544	1.00[EUR][1000 genomes]
rs59023483	1.00[EUR][1000 genomes]
rs59618733	1.00[EUR][1000 genomes]
rs59776629	1.00[EUR][1000 genomes]
rs59868150	1.00[EUR][1000 genomes]
rs60050075	1.00[EUR][1000 genomes]
rs60121998	1.00[EUR][1000 genomes]
rs61244656	1.00[EUR][1000 genomes]
rs61600663	1.00[EUR][1000 genomes]
rs6449976	1.00[EUR][1000 genomes]
rs6449978	1.00[EUR][1000 genomes]
rs6449979	1.00[EUR][1000 genomes]
rs6861518	1.00[EUR][1000 genomes]
rs6862265	1.00[EUR][1000 genomes]
rs6867202	1.00[EUR][1000 genomes]
rs6867735	1.00[EUR][1000 genomes]
rs6876368	1.00[EUR][1000 genomes]
rs6878268	1.00[EUR][1000 genomes]
rs6883147	1.00[EUR][1000 genomes]
rs6883399	1.00[EUR][1000 genomes]
rs6893921	1.00[EUR][1000 genomes]
rs6897175	1.00[EUR][1000 genomes]
rs73114938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114961	1.00[EUR][1000 genomes]
rs73114965	1.00[EUR][1000 genomes]
rs73114968	1.00[EUR][1000 genomes]
rs73114969	1.00[EUR][1000 genomes]
rs73114971	1.00[EUR][1000 genomes]
rs73775816	1.00[EUR][1000 genomes]
rs73775825	1.00[EUR][1000 genomes]
rs73775832	1.00[EUR][1000 genomes]
rs73775842	1.00[EUR][1000 genomes]
rs7708858	1.00[EUR][1000 genomes]
rs7712243	1.00[EUR][1000 genomes]
rs7717178	1.00[EUR][1000 genomes]
rs7717340	1.00[EUR][1000 genomes]
rs7720166	1.00[EUR][1000 genomes]
rs7725200	1.00[EUR][1000 genomes]
rs7727281	1.00[EUR][1000 genomes]
rs7735079	1.00[EUR][1000 genomes]

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68320400-68327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:68325000-68327000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:68326200-68327200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links