Variant report

Variant	rs58681361
Chromosome Location	chr22:31544632-31544633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr22:31344139..31345750-chr22:31542984..31544956,2	MCF-7	breast:
2	chr22:31480902..31481608-chr22:31544620..31545375,2	MCF-7	breast:
3	chr22:31478295..31481247-chr22:31543765..31545461,2	MCF-7	breast:
4	chr22:31492929..31495989-chr22:31543967..31548014,3	K562	blood:
5	chr22:31543984..31547143-chr22:31547810..31551610,3	MCF-7	breast:
6	chr22:31484785..31485788-chr22:31544555..31545568,8	MCF-7	breast:
7	chr22:31544607..31546383-chr22:31550642..31552877,2	MCF-7	breast:
8	chr22:31503348..31504383-chr22:31544627..31545652,18	MCF-7	breast:
9	chr22:31503217..31504314-chr22:31544578..31545664,18	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction
ENSG00000214125	Chromatin interaction
ENSG00000273387	Chromatin interaction
ENSG00000198832	Chromatin interaction

rs_ID	r²[population]
rs5997904	0.86[AFR][1000 genomes]
rs73881341	0.88[AFR][1000 genomes]
rs73881343	0.85[AFR][1000 genomes]

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31539600-31544800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr22:31540000-31544800	Weak transcription	Brain Substantia Nigra	brain
3	chr22:31540400-31544800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr22:31544200-31545400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr22:31544400-31545200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:31544400-31545200	Enhancers	Right Atrium	heart
7	chr22:31544400-31545200	Enhancers	Stomach Smooth Muscle	stomach
8	chr22:31544400-31545200	Enhancers	HUVEC	blood vessel
9	chr22:31544400-31545200	Enhancers	NH-A	brain
10	chr22:31544400-31545600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr22:31544400-31545600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr22:31544600-31545000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr22:31544600-31545000	Enhancers	Aorta	Aorta
14	chr22:31544600-31545000	Enhancers	Fetal Stomach	stomach
15	chr22:31544600-31545000	Enhancers	Rectal Smooth Muscle	rectum
16	chr22:31544600-31545000	Enhancers	NHLF	lung
17	chr22:31544600-31545200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr22:31544600-31545200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr22:31544600-31545200	Enhancers	Fetal Muscle Leg	muscle
20	chr22:31544600-31545200	Enhancers	Placenta	Placenta
21	chr22:31544600-31545400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr22:31544600-31545400	Enhancers	Adipose Nuclei	Adipose
23	chr22:31544600-31545400	Enhancers	Brain Anterior Caudate	brain
24	chr22:31544600-31545400	Enhancers	Brain Hippocampus Middle	brain
25	chr22:31544600-31545400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr22:31544600-31545400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr22:31544600-31545400	Enhancers	Hela-S3	cervix
28	chr22:31544600-31545400	Enhancers	Osteobl	bone
29	chr22:31544600-31545600	Enhancers	Colon Smooth Muscle	Colon
30	chr22:31544600-31546200	Enhancers	Placenta Amnion	Placenta Amnion

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