Variant report

Variant	rs73881343
Chromosome Location	chr22:31575770-31575771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31573119..31575986-chr22:31580233..31581989,2	MCF-7	breast:
2	chr22:31574262..31577015-chr22:31586788..31588411,2	MCF-7	breast:
3	chr22:31572111..31576977-chr22:31606424..31611296,5	MCF-7	breast:
4	chr22:31573934..31576714-chr22:31601600..31604978,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254835	Chromatin interaction
ENSG00000182541	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs34199962	1.00[AMR][1000 genomes]
rs58465541	1.00[AMR][1000 genomes]
rs58681361	0.85[AFR][1000 genomes]
rs5997885	1.00[AMR][1000 genomes]
rs5997904	0.94[AFR][1000 genomes]
rs5997967	1.00[AMR][1000 genomes]
rs5997970	1.00[AMR][1000 genomes]
rs61282733	1.00[AMR][1000 genomes]
rs73881328	1.00[AMR][1000 genomes]
rs73881341	0.97[AFR][1000 genomes]
rs73881353	1.00[AMR][1000 genomes]
rs73881354	1.00[AMR][1000 genomes]
rs73881371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31557200-31591200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr22:31557400-31579800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:31557400-31595200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr22:31557400-31597800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr22:31557600-31578600	Weak transcription	K562	blood
6	chr22:31557600-31591800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr22:31557800-31587000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr22:31557800-31588400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:31558000-31578000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr22:31558600-31583000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr22:31558600-31591400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr22:31558800-31591200	Weak transcription	Fetal Brain Male	brain
13	chr22:31558800-31606000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr22:31562400-31583200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr22:31562600-31578400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr22:31563000-31577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr22:31564600-31582600	Weak transcription	Fetal Thymus	thymus
18	chr22:31566200-31583000	Weak transcription	Brain Angular Gyrus	brain
19	chr22:31566400-31583000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr22:31569600-31583200	Weak transcription	Brain Anterior Caudate	brain
21	chr22:31569800-31583000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr22:31569800-31591600	Weak transcription	Small Intestine	intestine
23	chr22:31570000-31606400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr22:31570200-31583000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr22:31570400-31583000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr22:31570400-31586800	Strong transcription	Fetal Stomach	stomach
27	chr22:31570400-31597800	Weak transcription	HUVEC	blood vessel
28	chr22:31571600-31576000	Enhancers	HMEC	breast
29	chr22:31571800-31582800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:31572200-31575800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr22:31572200-31575800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr22:31572200-31576000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr22:31572200-31576000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr22:31572200-31576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr22:31572200-31600000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr22:31572400-31576000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr22:31572600-31576000	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr22:31572800-31575800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr22:31572800-31575800	Enhancers	NHLF	lung
40	chr22:31572800-31576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr22:31572800-31576000	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr22:31572800-31576000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr22:31572800-31576000	Genic enhancers	Liver	Liver
44	chr22:31572800-31576000	Genic enhancers	HSMM	muscle
45	chr22:31572800-31576400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr22:31572800-31576400	Strong transcription	Primary T cells from cord blood	blood
47	chr22:31572800-31578800	Strong transcription	Primary B cells from peripheral blood	blood
48	chr22:31572800-31579400	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr22:31573000-31576000	Genic enhancers	Fetal Intestine Large	intestine
50	chr22:31573000-31576000	Enhancers	Placenta Amnion	Placenta Amnion

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