Variant report

Variant	rs73881353
Chromosome Location	chr22:31615025-31615026
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31607740..31612588-chr22:31613432..31617024,5	MCF-7	breast:
2	chr22:31612460..31616795-chr22:31617832..31622483,6	K562	blood:
3	chr22:31606939..31608587-chr22:31613906..31616819,2	K562	blood:

Variant related genes	Relation type
ENSG00000182541	Chromatin interaction
ENSG00000199695	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs34199962	1.00[AMR][1000 genomes]
rs58465541	1.00[AMR][1000 genomes]
rs5997885	1.00[AMR][1000 genomes]
rs5997967	1.00[AMR][1000 genomes]
rs5997970	1.00[AMR][1000 genomes]
rs61282733	1.00[AMR][1000 genomes]
rs73881328	1.00[AMR][1000 genomes]
rs73881343	1.00[AMR][1000 genomes]
rs73881354	1.00[AMR][1000 genomes]
rs73881371	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31608800-31639800	Weak transcription	Aorta	Aorta
2	chr22:31609200-31616200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr22:31609200-31619600	Weak transcription	Brain Substantia Nigra	brain
4	chr22:31609200-31629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr22:31609400-31616200	Weak transcription	A549	lung
6	chr22:31609400-31617800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr22:31609400-31619000	Weak transcription	HSMM	muscle
8	chr22:31609400-31619600	Weak transcription	Brain Angular Gyrus	brain
9	chr22:31609400-31621800	Weak transcription	Fetal Brain Female	brain
10	chr22:31609400-31625400	Weak transcription	NHLF	lung
11	chr22:31609400-31625400	Weak transcription	Osteobl	bone
12	chr22:31609600-31615200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr22:31609600-31616200	Weak transcription	Spleen	Spleen
14	chr22:31609600-31616600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr22:31609600-31619000	Weak transcription	Brain Anterior Caudate	brain
16	chr22:31609600-31619000	Weak transcription	Fetal Lung	lung
17	chr22:31609600-31619000	Weak transcription	Psoas Muscle	Psoas
18	chr22:31609600-31621400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr22:31609600-31621600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr22:31609600-31621600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr22:31609600-31623000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr22:31609600-31623000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr22:31609600-31623400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:31609600-31624000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr22:31609600-31624800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr22:31609600-31625000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr22:31609600-31625400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr22:31609600-31625600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr22:31609600-31627200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr22:31609600-31639200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr22:31609800-31615200	Genic enhancers	Fetal Intestine Small	intestine
32	chr22:31609800-31615600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr22:31609800-31618800	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr22:31609800-31620400	Enhancers	Fetal Intestine Large	intestine
35	chr22:31609800-31621400	Weak transcription	Dnd41	blood
36	chr22:31609800-31621800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr22:31609800-31629400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr22:31610000-31621600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr22:31610600-31621000	Enhancers	Pancreas	Pancrea
40	chr22:31610800-31618000	Weak transcription	Placenta	Placenta
41	chr22:31611200-31616000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
42	chr22:31611200-31616000	Enhancers	HepG2	liver
43	chr22:31611600-31616000	Weak transcription	Liver	Liver
44	chr22:31611800-31620800	Weak transcription	Fetal Stomach	stomach
45	chr22:31612000-31617000	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr22:31612200-31615600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr22:31612400-31622800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr22:31612600-31615200	Enhancers	Right Atrium	heart
49	chr22:31612600-31617200	Weak transcription	Lung	lung
50	chr22:31612600-31621800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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