Variant report
| Variant | rs58697315 |
|---|---|
| Chromosome Location | chr5:98409744-98409745 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:98403925..98406393-chr5:98408428..98410098,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10057971 | 0.85[ASN][1000 genomes] |
| rs10059861 | 0.85[ASN][1000 genomes] |
| rs10477871 | 0.82[ASN][1000 genomes] |
| rs11738286 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11743338 | 0.85[ASN][1000 genomes] |
| rs11960035 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs16779 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs17166635 | 0.85[ASN][1000 genomes] |
| rs2369575 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3866454 | 0.82[ASN][1000 genomes] |
| rs4035624 | 0.82[ASN][1000 genomes] |
| rs61344339 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62376593 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs62376621 | 0.82[ASN][1000 genomes] |
| rs6884259 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6896400 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6898793 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7724878 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:98407000-98411600 | Weak transcription | K562 | blood |
