Variant report

Variant	rs11743338
Chromosome Location	chr5:98422213-98422214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10057971	1.00[ASN][1000 genomes]
rs10059861	1.00[ASN][1000 genomes]
rs10067087	0.82[ASN][1000 genomes]
rs10477871	0.96[ASN][1000 genomes]
rs10515286	0.82[ASN][1000 genomes]
rs11738104	0.82[ASN][1000 genomes]
rs11738286	1.00[ASN][1000 genomes]
rs1348926	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1447378	0.82[ASN][1000 genomes]
rs17166635	1.00[ASN][1000 genomes]
rs2369575	1.00[ASN][1000 genomes]
rs34218854	0.82[ASN][1000 genomes]
rs3866454	0.96[ASN][1000 genomes]
rs4035624	0.96[ASN][1000 genomes]
rs58697315	0.85[ASN][1000 genomes]
rs61344339	1.00[ASN][1000 genomes]
rs62373462	0.82[ASN][1000 genomes]
rs62376621	0.96[ASN][1000 genomes]
rs6884259	1.00[ASN][1000 genomes]
rs6896400	1.00[ASN][1000 genomes]
rs7724878	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98414600-98423600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98422200-98423000	Enhancers	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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