Variant report
| Variant | rs62373462 |
|---|---|
| Chromosome Location | chr5:98449216-98449217 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:12069041..12070712-chr5:98447812..98450049,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234719 | Chromatin interaction |
| ENSG00000048471 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10057971 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10059861 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10067087 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10477871 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10515286 | 0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11738104 | 0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11738286 | 0.82[ASN][1000 genomes] |
| rs11743338 | 0.82[ASN][1000 genomes] |
| rs1348926 | 0.89[ASN][1000 genomes] |
| rs1447378 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1447383 | 0.81[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17166635 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2369575 | 0.82[ASN][1000 genomes] |
| rs34218854 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3866454 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4035624 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs61344339 | 0.82[ASN][1000 genomes] |
| rs62376621 | 0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6884259 | 0.82[ASN][1000 genomes] |
| rs6896400 | 0.82[ASN][1000 genomes] |
| rs7724878 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024391 | chr5:98355665-98653657 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv599118 | chr5:98358191-99029453 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv599119 | chr5:98358191-99315677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv882417 | chr5:98428184-98548315 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv482367 | chr5:98440337-98606909 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv882418 | chr5:98447682-98694849 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
