Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:98440489..98443167-chr5:98443628..98445845,2	K562	blood:
2	chr5:98440068..98440810-chr5:99647288..99647935,2	MCF-7	breast:
3	chr5:98439732..98443167-chr5:98443628..98446985,4	K562	blood:
4	chr5:98440206..98440855-chr5:98503610..98504175,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10057971	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10059861	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10067087	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477871	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10515286	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11738286	0.82[ASN][1000 genomes]
rs11743338	0.82[ASN][1000 genomes]
rs1348926	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1447378	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1447383	0.89[ASN][1000 genomes]
rs17166635	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2369575	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34218854	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3866454	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4035624	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61344339	0.82[ASN][1000 genomes]
rs62373462	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62376621	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6884259	0.82[ASN][1000 genomes]
rs6896400	0.82[ASN][1000 genomes]
rs7724878	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv882417	chr5:98428184-98548315	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv482367	chr5:98440337-98606909	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98438600-98441000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:98440600-98440800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:98440600-98441200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:98440600-98441400	Enhancers	HUVEC	blood vessel
5	chr5:98440600-98441800	Enhancers	Fetal Lung	lung

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