Variant report

Variant	rs58704403
Chromosome Location	chr3:50971995-50971996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12492850	0.93[AFR][1000 genomes]
rs4688697	0.83[AFR][1000 genomes]
rs58720544	0.82[AFR][1000 genomes]
rs60204288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60882641	0.83[AFR][1000 genomes]
rs61627377	0.83[AFR][1000 genomes]
rs72935279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937265	0.83[AFR][1000 genomes]
rs72937269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7372342	0.83[AFR][1000 genomes]
rs7426964	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1803890	chr3:50966037-50987194	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50960000-50973000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:50964600-50972600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:50968200-50972600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:50968400-50973000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:50969800-50972800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:50971400-50972600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:50971400-50972800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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