Variant report

Variant	rs7426964
Chromosome Location	chr3:51032296-51032297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12491206	0.83[AFR][1000 genomes]
rs12492850	0.84[AFR][1000 genomes]
rs12494214	0.83[AFR][1000 genomes]
rs4073739	0.83[AFR][1000 genomes]
rs58704403	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60204288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61578076	1.00[AMR][1000 genomes]
rs72935279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72937300	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72939228	0.82[AFR][1000 genomes]
rs7427615	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51030000-51033600	Enhancers	Liver	Liver
2	chr3:51032000-51032800	Weak transcription	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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