Variant report

Variant	rs61578076
Chromosome Location	chr3:51260299-51260300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51250206..51252803-chr3:51259861..51262206,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12495561	0.81[AFR][1000 genomes]
rs12496830	0.84[AFR][1000 genomes]
rs1480366	1.00[AMR][1000 genomes]
rs17051685	1.00[AMR][1000 genomes]
rs17051802	1.00[AMR][1000 genomes]
rs56052360	0.86[AFR][1000 genomes]
rs57019473	1.00[AMR][1000 genomes]
rs58807639	1.00[AMR][1000 genomes]
rs72937300	1.00[AMR][1000 genomes]
rs72939205	1.00[AMR][1000 genomes]
rs72943888	1.00[AMR][1000 genomes]
rs72945711	1.00[AMR][1000 genomes]
rs72945738	1.00[AMR][1000 genomes]
rs72945741	1.00[AMR][1000 genomes]
rs72953175	0.81[AFR][1000 genomes]
rs7426964	1.00[AMR][1000 genomes]
rs880477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51234600-51262800	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51235800-51285000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:51236600-51265000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51248000-51282600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:51248200-51265600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:51251600-51264800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:51252000-51288200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:51252000-51312600	Weak transcription	HSMMtube	muscle
9	chr3:51252800-51277000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:51253400-51274000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr3:51253400-51312200	Weak transcription	Brain Substantia Nigra	brain
12	chr3:51254200-51262800	Weak transcription	Fetal Brain Female	brain
13	chr3:51255000-51276200	Weak transcription	Fetal Brain Male	brain
14	chr3:51256400-51264600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr3:51257400-51265600	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:51257400-51274200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:51257400-51279600	Weak transcription	Brain Anterior Caudate	brain
18	chr3:51257800-51265200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr3:51259800-51264600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:51259800-51265200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr3:51259800-51265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:51259800-51284000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr3:51259800-51284000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:51260000-51265200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr3:51260000-51268000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr3:51260000-51284400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr3:51260000-51284800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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