Variant report

Variant	rs72945738
Chromosome Location	chr3:51518119-51518120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1480366	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17051685	1.00[AMR][1000 genomes]
rs17051802	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4280628	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57019473	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58075772	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58807639	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59307262	1.00[AMR][1000 genomes]
rs60497133	1.00[AMR][1000 genomes]
rs61452834	1.00[AMR][1000 genomes]
rs61578076	1.00[AMR][1000 genomes]
rs72943888	1.00[AMR][1000 genomes]
rs72945711	1.00[AMR][1000 genomes]
rs72945741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951466	1.00[AMR][1000 genomes]
rs72951469	1.00[AMR][1000 genomes]
rs72951474	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951478	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951489	1.00[AMR][1000 genomes]
rs72953404	1.00[AMR][1000 genomes]
rs72953419	1.00[AMR][1000 genomes]
rs72953421	1.00[AMR][1000 genomes]
rs753452	0.91[AFR][1000 genomes]
rs880477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51467800-51524000	Weak transcription	Small Intestine	intestine
2	chr3:51491400-51532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:51495000-51532600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:51495800-51518200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr3:51495800-51518200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:51495800-51526800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr3:51495800-51531800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:51496000-51518400	Strong transcription	Fetal Stomach	stomach
9	chr3:51496000-51531800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:51496200-51530600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr3:51496200-51531000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr3:51496400-51525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:51497200-51524400	Weak transcription	Right Ventricle	heart
14	chr3:51497600-51518200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:51499400-51532800	Weak transcription	Fetal Heart	heart
16	chr3:51500600-51532800	Weak transcription	Fetal Kidney	kidney
17	chr3:51501000-51532400	Weak transcription	Psoas Muscle	Psoas
18	chr3:51501000-51532800	Weak transcription	NH-A	brain
19	chr3:51504800-51533000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:51505000-51531600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr3:51505000-51533000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:51506400-51523200	Weak transcription	HSMMtube	muscle
23	chr3:51506600-51523000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:51506600-51530800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr3:51506600-51532600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:51506600-51532600	Weak transcription	K562	blood
27	chr3:51508200-51529800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:51509000-51526400	Strong transcription	Fetal Thymus	thymus
29	chr3:51509600-51518200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:51509800-51525200	Weak transcription	Colonic Mucosa	Colon
31	chr3:51510200-51520400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr3:51510600-51522000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr3:51511000-51518200	Strong transcription	Liver	Liver
34	chr3:51511200-51519800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr3:51511400-51519600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr3:51511400-51526600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr3:51511600-51518200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr3:51511600-51518400	Strong transcription	Primary B cells from peripheral blood	blood
39	chr3:51511600-51518600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:51511600-51518600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:51511800-51518200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr3:51511800-51518200	Strong transcription	Adipose Nuclei	Adipose
43	chr3:51511800-51518400	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr3:51512000-51518200	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:51512000-51518200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr3:51512000-51518200	Strong transcription	Left Ventricle	heart
47	chr3:51512000-51518600	Strong transcription	Fetal Muscle Leg	muscle
48	chr3:51512000-51522000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:51512400-51533000	Weak transcription	Aorta	Aorta
50	chr3:51513600-51523000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links