Variant report

Variant	rs72951466
Chromosome Location	chr3:51569327-51569328
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1480366	1.00[AMR][1000 genomes]
rs17051685	1.00[AMR][1000 genomes]
rs17051802	1.00[AMR][1000 genomes]
rs4280628	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57019473	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58075772	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58807639	1.00[AMR][1000 genomes]
rs59307262	1.00[AMR][1000 genomes]
rs60497133	1.00[AMR][1000 genomes]
rs61452834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943888	1.00[AMR][1000 genomes]
rs72945711	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945738	1.00[AMR][1000 genomes]
rs72945741	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951454	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951474	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951478	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951489	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953404	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953419	1.00[AMR][1000 genomes]
rs72953421	1.00[AMR][1000 genomes]
rs880477	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51563200-51572000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:51568800-51572000	Enhancers	Placenta	Placenta
3	chr3:51569200-51570000	Enhancers	Liver	Liver
4	chr3:51569200-51570000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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