Variant report

Variant	rs72951454
Chromosome Location	chr3:51554410-51554411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1480366	1.00[AMR][1000 genomes]
rs17051685	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17051802	1.00[AMR][1000 genomes]
rs4280628	1.00[AMR][1000 genomes]
rs57019473	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58075772	1.00[AMR][1000 genomes]
rs58807639	1.00[AMR][1000 genomes]
rs59307262	1.00[AMR][1000 genomes]
rs60497133	1.00[AMR][1000 genomes]
rs61452834	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72943888	1.00[AMR][1000 genomes]
rs72945711	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945738	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72945741	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951469	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72951474	1.00[AMR][1000 genomes]
rs72951478	1.00[AMR][1000 genomes]
rs72951489	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72953404	1.00[AMR][1000 genomes]
rs72953419	1.00[AMR][1000 genomes]
rs72953421	1.00[AMR][1000 genomes]
rs880477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51553400-51554600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:51553400-51554800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:51553600-51554800	Enhancers	HepG2	liver
4	chr3:51553800-51554600	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:51553800-51554600	Enhancers	Brain Hippocampus Middle	brain
6	chr3:51554200-51554600	Enhancers	Brain Substantia Nigra	brain
7	chr3:51554200-51556800	Enhancers	Primary B cells from cord blood	blood
8	chr3:51554400-51556400	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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