The 2.0 version of rSNPBase

Variant report

Variant rs58708905
Chromosome Location chr15:55522055-55522056
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:55489800-55540200 Weak transcription Esophagus oesophagus
2 chr15:55490000-55529400 Weak transcription Rectal Smooth Muscle rectum
3 chr15:55490000-55562800 Weak transcription Ovary ovary
4 chr15:55508600-55522600 Weak transcription Colon Smooth Muscle Colon
5 chr15:55509400-55541600 Weak transcription Small Intestine intestine
6 chr15:55510400-55522600 Strong transcription Breast Myoepithelial Primary Cells Breast
7 chr15:55510400-55525000 Weak transcription Fetal Muscle Trunk muscle
8 chr15:55510400-55528000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr15:55510600-55523800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr15:55512800-55541600 Weak transcription Colonic Mucosa Colon
11 chr15:55513400-55532400 Weak transcription Left Ventricle heart
12 chr15:55514200-55522200 Weak transcription Muscle Satellite Cultured Cells --
13 chr15:55514200-55523000 Weak transcription NHEK skin
14 chr15:55514200-55532000 Weak transcription Lung lung
15 chr15:55514200-55532600 Weak transcription Psoas Muscle Psoas
16 chr15:55514200-55540400 Weak transcription Placenta Amnion Placenta Amnion
17 chr15:55514200-55545200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr15:55514400-55541200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr15:55514600-55522400 Weak transcription HMEC breast
20 chr15:55514600-55522600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr15:55514600-55534200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
22 chr15:55514600-55542600 Weak transcription Hela-S3 cervix
23 chr15:55514600-55543200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr15:55514800-55522400 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr15:55514800-55532600 Weak transcription Adipose Nuclei Adipose
26 chr15:55514800-55539800 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr15:55514800-55560400 Weak transcription Spleen Spleen
28 chr15:55515200-55522200 Weak transcription ES-I3 Cell Line embryonic stem cell
29 chr15:55515400-55526200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
30 chr15:55516000-55524600 Genic enhancers Primary neutrophils fromperipheralblood blood
31 chr15:55516000-55559600 Weak transcription Fetal Stomach stomach
32 chr15:55516200-55529400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr15:55517600-55522400 Weak transcription Pancreas Pancrea
34 chr15:55517600-55542800 Weak transcription Thymus Thymus
35 chr15:55517800-55522400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
36 chr15:55517800-55525600 Weak transcription Primary T cells from cord blood blood
37 chr15:55517800-55526600 Weak transcription Fetal Intestine Small intestine
38 chr15:55517800-55532400 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr15:55517800-55539600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr15:55517800-55542200 Weak transcription Fetal Thymus thymus
41 chr15:55517800-55542800 Weak transcription Primary B cells from peripheral blood blood
42 chr15:55518000-55522200 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr15:55518000-55522400 Weak transcription NHLF lung
44 chr15:55518000-55524000 Weak transcription Fetal Muscle Leg muscle
45 chr15:55518000-55539200 Weak transcription Fetal Lung lung
46 chr15:55518200-55522200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
47 chr15:55518200-55522200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
48 chr15:55518200-55522400 Strong transcription Primary T cells fromperipheralblood blood
49 chr15:55518600-55526200 Weak transcription Rectal Mucosa Donor 31 rectum
50 chr15:55518600-55527000 Strong transcription Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015