Variant report

Variant	rs58709319
Chromosome Location	chr4:96684892-96684893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10049688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930626	1.00[EUR][1000 genomes]
rs11942941	1.00[EUR][1000 genomes]
rs1436561	1.00[EUR][1000 genomes]
rs1836903	1.00[EUR][1000 genomes]
rs1836904	1.00[EUR][1000 genomes]
rs1836905	1.00[EUR][1000 genomes]
rs28550674	1.00[EUR][1000 genomes]
rs28802131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60331700	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61008276	1.00[EUR][1000 genomes]
rs61695477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6532573	1.00[EUR][1000 genomes]
rs6812551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6837915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6845293	1.00[EUR][1000 genomes]
rs72884090	1.00[EUR][1000 genomes]
rs72884091	1.00[EUR][1000 genomes]
rs72884101	1.00[EUR][1000 genomes]
rs72885624	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885625	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885702	1.00[EUR][1000 genomes]
rs72887505	1.00[EUR][1000 genomes]
rs72887506	1.00[EUR][1000 genomes]
rs72887509	1.00[EUR][1000 genomes]
rs72887510	1.00[EUR][1000 genomes]
rs72887518	1.00[EUR][1000 genomes]
rs72887519	1.00[EUR][1000 genomes]
rs72887522	1.00[EUR][1000 genomes]
rs72887550	1.00[EUR][1000 genomes]
rs72887576	1.00[EUR][1000 genomes]
rs72887578	1.00[EUR][1000 genomes]
rs73839620	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656306	1.00[EUR][1000 genomes]
rs7661333	1.00[EUR][1000 genomes]
rs7680705	1.00[EUR][1000 genomes]
rs7681050	1.00[EUR][1000 genomes]
rs7681350	1.00[EUR][1000 genomes]
rs7686142	1.00[EUR][1000 genomes]
rs7686287	1.00[EUR][1000 genomes]
rs7695350	1.00[EUR][1000 genomes]
rs9942151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96683400-96685400	Weak transcription	HMEC	breast
2	chr4:96683400-96685800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:96683400-96685800	Weak transcription	NHEK	skin
4	chr4:96683800-96685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:96684800-96685000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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