Variant report

Variant	rs72884101
Chromosome Location	chr4:96677760-96677761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:96669276..96670825-chr4:96677264..96679662,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10049688	1.00[EUR][1000 genomes]
rs11930626	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1436561	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836903	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836904	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1836905	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28550674	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28802131	1.00[EUR][1000 genomes]
rs58709319	1.00[EUR][1000 genomes]
rs60331700	1.00[EUR][1000 genomes]
rs61008276	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61695477	1.00[EUR][1000 genomes]
rs6532573	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812551	1.00[EUR][1000 genomes]
rs6829403	1.00[EUR][1000 genomes]
rs6829785	1.00[EUR][1000 genomes]
rs6837915	1.00[EUR][1000 genomes]
rs6845293	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884090	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72884091	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885624	1.00[EUR][1000 genomes]
rs72885625	1.00[EUR][1000 genomes]
rs72885702	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887505	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887506	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887509	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887510	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887518	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887519	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887550	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887576	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72887578	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839620	1.00[EUR][1000 genomes]
rs7441925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7656306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661333	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7680705	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7681350	1.00[EUR][1000 genomes]
rs7686142	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7686287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7695350	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9942151	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830012	chr4:96547783-96746163	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1844506	chr4:96554889-96704333	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv997304	chr4:96575198-96861349	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1010830	chr4:96607025-96862878	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv537191	chr4:96607025-96862878	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv428767	chr4:96676384-96831793	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96665800-96682200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:96666600-96682800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:96677400-96677800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:96677400-96679200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:96677400-96680200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:96677600-96677800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:96677600-96678200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:96677600-96680000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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