Variant report

Variant	rs58723548
Chromosome Location	chr15:74847468-74847469
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12591497	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12593898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594316	0.82[ASN][1000 genomes]
rs12594486	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16953854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969770	0.90[EUR][1000 genomes]
rs1799814	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74836200-74848000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
2	chr15:74838600-74847600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:74839000-74855600	Weak transcription	Aorta	Aorta
4	chr15:74839000-74863400	Weak transcription	Gastric	stomach
5	chr15:74839000-74863600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74839200-74847800	Weak transcription	Psoas Muscle	Psoas
7	chr15:74839200-74850000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:74839200-74856400	Weak transcription	Fetal Kidney	kidney
9	chr15:74839200-74859200	Weak transcription	HepG2	liver
10	chr15:74839200-74860800	Weak transcription	Colonic Mucosa	Colon
11	chr15:74839200-74862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:74839200-74865200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr15:74839200-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:74839200-74866800	Weak transcription	Pancreas	Pancrea
15	chr15:74839400-74865800	Weak transcription	HUVEC	blood vessel
16	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
17	chr15:74839600-74862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:74840000-74862000	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
20	chr15:74840800-74862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:74841000-74862000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:74841000-74862000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr15:74841200-74850600	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:74841200-74851200	Weak transcription	Small Intestine	intestine
25	chr15:74841200-74854800	Weak transcription	Spleen	Spleen
26	chr15:74841200-74857800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr15:74841200-74859400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:74841200-74862000	Weak transcription	Brain Substantia Nigra	brain
29	chr15:74841200-74862200	Weak transcription	Brain Angular Gyrus	brain
30	chr15:74841200-74862400	Weak transcription	Left Ventricle	heart
31	chr15:74841200-74862600	Weak transcription	Right Ventricle	heart
32	chr15:74841400-74851200	Weak transcription	Brain Anterior Caudate	brain
33	chr15:74841400-74857800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:74841400-74861800	Weak transcription	Thymus	Thymus
35	chr15:74842400-74848200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr15:74842400-74862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr15:74842400-74865000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:74842600-74848000	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:74842600-74862000	Weak transcription	NH-A	brain
40	chr15:74842800-74850200	Weak transcription	Fetal Brain Male	brain
41	chr15:74843000-74855800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:74843200-74848400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:74843200-74856000	Weak transcription	Lung	lung
44	chr15:74843200-74862000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr15:74843200-74865600	Weak transcription	Esophagus	oesophagus
46	chr15:74843400-74850000	Weak transcription	NHEK	skin
47	chr15:74843400-74855400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:74843400-74857600	Weak transcription	Fetal Muscle Leg	muscle
49	chr15:74843400-74857800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr15:74843400-74862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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