Variant report

Variant	rs16969770
Chromosome Location	chr15:74823609-74823610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74822427..74825765-chr15:74831292..74834825,5	MCF-7	breast:
2	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:
3	chr15:74823237..74825654-chr15:74828712..74830605,2	K562	blood:
4	chr15:74822266..74825721-chr15:74827870..74831013,4	K562	blood:
5	chr15:74823437..74825810-chr15:74912083..74914513,2	MCF-7	breast:
6	chr15:74818058..74820598-chr15:74821407..74823908,2	K562	blood:
7	chr15:74802902..74805887-chr15:74821101..74823845,2	MCF-7	breast:
8	chr15:74822726..74824283-chr15:74826897..74828835,2	MCF-7	breast:
9	chr15:74817985..74820137-chr15:74821769..74824391,2	MCF-7	breast:
10	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12591497	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12593898	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs12594105	1.00[CEU][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12594316	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs12594462	1.00[CEU][hapmap]
rs12594486	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594826	1.00[AFR][1000 genomes]
rs16953854	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs16969096	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1799814	1.00[CEU][hapmap]
rs3184088	1.00[CEU][hapmap]
rs3747478	1.00[CEU][hapmap]
rs58386058	0.81[EUR][1000 genomes]
rs58723548	0.90[EUR][1000 genomes]
rs58747223	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7180069	1.00[YRI][hapmap]
rs8023274	1.00[CEU][hapmap]
rs8027459	0.85[ASN][1000 genomes]
rs8031284	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74821000-74824200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:74821200-74824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74821400-74823800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr15:74821400-74824600	Enhancers	NH-A	brain
6	chr15:74821800-74824400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:74821800-74824400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:74821800-74824600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:74821800-74824600	Enhancers	Placenta	Placenta
10	chr15:74821800-74824600	Enhancers	HMEC	breast
11	chr15:74821800-74824600	Enhancers	Osteobl	bone
12	chr15:74822000-74824600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
14	chr15:74822200-74824400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74822400-74824000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr15:74822400-74824400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:74822400-74824400	Enhancers	NHLF	lung
18	chr15:74822400-74824600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:74822400-74824600	Enhancers	NHEK	skin
20	chr15:74822400-74824800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:74822600-74824400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:74822600-74824400	Enhancers	Hela-S3	cervix
23	chr15:74822800-74824600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr15:74822800-74824600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:74822800-74827200	Weak transcription	GM12878-XiMat	blood
26	chr15:74823000-74824000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr15:74823000-74824600	Enhancers	HSMM	muscle
28	chr15:74823200-74824000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:74823200-74824000	Enhancers	NHDF-Ad	bronchial
30	chr15:74823200-74824200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:74823200-74824200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:74823200-74824200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:74823200-74824400	Enhancers	A549	lung
34	chr15:74823200-74824400	Enhancers	HepG2	liver
35	chr15:74823200-74824600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr15:74823400-74823800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr15:74823400-74823800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:74823400-74824000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:74823400-74824200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr15:74823400-74824600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:74823600-74824000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:74823600-74824000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:74823600-74824200	Enhancers	HSMMtube	muscle
44	chr15:74823600-74824400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr15:74823600-74824400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr15:74823600-74824400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr15:74823600-74824400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr15:74823600-74824600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr15:74823600-74828000	Weak transcription	Placenta Amnion	Placenta Amnion

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