Variant report

Variant	rs8027459
Chromosome Location	chr15:74770334-74770335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12593898	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs12594105	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs12594316	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap]
rs12594462	1.00[CEU][hapmap]
rs12594486	0.82[ASN][1000 genomes]
rs12594826	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16953854	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs16969096	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16969770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3184088	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3747478	1.00[CEU][hapmap]
rs59976160	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8023274	1.00[CEU][hapmap]
rs8031284	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74770800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:74754600-74773000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:74754600-74773800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:74754600-74773800	Weak transcription	Gastric	stomach
7	chr15:74754600-74774800	Weak transcription	Esophagus	oesophagus
8	chr15:74754600-74775200	Weak transcription	Fetal Intestine Large	intestine
9	chr15:74754600-74775200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:74754600-74780000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:74754600-74781800	Weak transcription	Placenta	Placenta
12	chr15:74754600-74782000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:74754600-74782600	Weak transcription	Fetal Brain Female	brain
14	chr15:74754600-74784400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:74754600-74789800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:74754800-74771200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr15:74754800-74782400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:74755200-74773400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:74755200-74775000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr15:74755200-74776200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr15:74755200-74789200	Weak transcription	NHEK	skin
23	chr15:74755200-74789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:74755200-74790000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:74755400-74770800	Weak transcription	Fetal Lung	lung
26	chr15:74755400-74775000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:74755400-74789400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:74756800-74781800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:74757000-74782000	Weak transcription	Primary B cells from cord blood	blood
30	chr15:74757200-74782400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr15:74760800-74785600	Weak transcription	Ovary	ovary
32	chr15:74761000-74771200	Weak transcription	HSMM	muscle
33	chr15:74761000-74773800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
35	chr15:74761400-74771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:74763400-74772200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:74763600-74772400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr15:74763600-74773200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:74763600-74782400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr15:74764600-74772600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:74764800-74773200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:74765200-74775400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr15:74765200-74782000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr15:74765400-74781000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr15:74765400-74782200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr15:74766200-74774200	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:74766200-74781600	Weak transcription	Primary hematopoietic stem cells	blood

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