Variant report
| Variant | rs58747223 |
|---|---|
| Chromosome Location | chr15:74999960-74999961 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:74987519..74990221-chr15:74998130..75000827,2 | K562 | blood: | |
| 2 | chr15:74987388..74990253-chr15:74999582..75003746,3 | MCF-7 | breast: | |
| 3 | chr15:74997334..74999629-chr15:74999776..75002608,3 | K562 | blood: | |
| 4 | chr15:74986952..74989537-chr15:74997300..75000064,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179151 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs12591497 | 0.82[AMR][1000 genomes] |
| rs12594105 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12594316 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12594486 | 0.81[EUR][1000 genomes] |
| rs16969096 | 0.83[AMR][1000 genomes] |
| rs16969770 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3184088 | 0.81[EUR][1000 genomes] |
| rs58386058 | 1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs59825838 | 0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs60494023 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904379 | chr15:74869438-75027880 | Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 2 | nsv904380 | chr15:74869438-75142761 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 69 gene(s) | inside rSNPs | diseases |
| 3 | nsv817698 | chr15:74889163-75019449 | Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 54 gene(s) | inside rSNPs | diseases |
| 4 | nsv833055 | chr15:74988344-75166288 | Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 46 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:74998200-75000600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
