Variant report

Variant	rs60494023
Chromosome Location	chr15:74961963-74961964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12594105	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12594316	0.82[AMR][1000 genomes]
rs3184088	0.88[AMR][1000 genomes]
rs58386058	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58747223	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59825838	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74921800-74963400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:74929200-74963400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr15:74933200-74963400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:74933400-74963200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:74934400-74962400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr15:74935400-74963400	Weak transcription	Aorta	Aorta
7	chr15:74936000-74963000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:74936000-74968800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:74936200-74963000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:74941200-74963000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:74946000-74962600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:74946000-74963200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:74946000-74966200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:74946800-74963400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:74947800-74970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr15:74948200-74963200	Weak transcription	Brain Germinal Matrix	brain
17	chr15:74948400-74962400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:74948400-74963200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:74948600-74963400	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:74948800-74963000	Weak transcription	Dnd41	blood
21	chr15:74949800-74963400	Weak transcription	Esophagus	oesophagus
22	chr15:74949800-74963400	Weak transcription	Lung	lung
23	chr15:74949800-74963400	Weak transcription	Thymus	Thymus
24	chr15:74950400-74964800	Weak transcription	Fetal Brain Male	brain
25	chr15:74950600-74963000	Weak transcription	K562	blood
26	chr15:74950600-74963400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:74950600-74963400	Weak transcription	Placenta	Placenta
28	chr15:74950800-74963000	Weak transcription	NHEK	skin
29	chr15:74956800-74962600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:74956800-74963000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:74956800-74963200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr15:74957000-74962000	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr15:74957000-74962600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr15:74957000-74962600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:74957000-74962800	Weak transcription	Gastric	stomach
36	chr15:74957000-74962800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr15:74957000-74963000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:74957000-74963000	Weak transcription	NHLF	lung
39	chr15:74957000-74963000	Weak transcription	Osteobl	bone
40	chr15:74957000-74963200	Weak transcription	Right Ventricle	heart
41	chr15:74957000-74963200	Weak transcription	Spleen	Spleen
42	chr15:74957000-74963200	Weak transcription	HSMMtube	muscle
43	chr15:74957000-74963200	Weak transcription	NHDF-Ad	bronchial
44	chr15:74957000-74963400	Weak transcription	Fetal Heart	heart
45	chr15:74957000-74963400	Weak transcription	Left Ventricle	heart
46	chr15:74957000-74963600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr15:74957000-74963800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:74957000-74987000	Weak transcription	HMEC	breast
49	chr15:74957000-74987400	Weak transcription	Psoas Muscle	Psoas
50	chr15:74957200-74963000	Weak transcription	Brain Hippocampus Middle	brain

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