Variant report

Variant	rs58735066
Chromosome Location	chr17:16317662-16317663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:16316817..16323346-chr17:16340136..16347615,14	MCF-7	breast:
2	chr17:16317117..16319974-chr17:16340448..16343551,4	MCF-7	breast:
3	chr17:16282157..16291704-chr17:16317315..16324527,14	K562	blood:
4	chr17:16255579..16258175-chr17:16317390..16320464,4	K562	blood:
5	chr17:16282157..16292955-chr17:16316721..16324527,22	K562	blood:
6	chr17:16285971..16289301-chr17:16317139..16320452,4	MCF-7	breast:
7	chr17:16247522..16250151-chr17:16316906..16319854,2	K562	blood:
8	chr17:16255579..16257907-chr17:16317390..16319077,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000265401	Chromatin interaction
ENSG00000266651	Chromatin interaction
ENSG00000166582	Chromatin interaction
ENSG00000170315	Chromatin interaction
ENSG00000175061	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59850480	1.00[AMR][1000 genomes]
rs61244787	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1063764	chr17:16171649-16662914	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	120 gene(s)	inside rSNPs	diseases
6	nsv1061463	chr17:16245878-16490691	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
7	nsv543216	chr17:16245878-16490691	Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
8	nsv1065254	chr17:16252880-16389930	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
9	nsv428668	chr17:16265210-16455285	Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16310600-16318200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:16310800-16318000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr17:16310800-16318400	Weak transcription	NHLF	lung
4	chr17:16311000-16318200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:16311000-16318400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:16311000-16318400	Weak transcription	Left Ventricle	heart
7	chr17:16311000-16318600	Weak transcription	Right Ventricle	heart
8	chr17:16311600-16318400	Weak transcription	Lung	lung
9	chr17:16311600-16318600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:16311800-16318200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:16311800-16318400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:16311800-16318400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr17:16311800-16318400	Weak transcription	Stomach Mucosa	stomach
14	chr17:16311800-16318600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr17:16311800-16318600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr17:16312000-16318200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr17:16312000-16318200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr17:16312000-16318200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr17:16312000-16318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr17:16312000-16318600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr17:16312000-16318600	Weak transcription	Fetal Intestine Small	intestine
22	chr17:16312000-16318600	Weak transcription	NH-A	brain
23	chr17:16312000-16318800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr17:16312000-16318800	Weak transcription	Right Atrium	heart
25	chr17:16312200-16318200	Weak transcription	HepG2	liver
26	chr17:16316000-16318200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr17:16316000-16318200	Weak transcription	K562	blood
28	chr17:16317600-16318200	Enhancers	GM12878-XiMat	blood

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