Variant report

Variant	rs58735295
Chromosome Location	chr6:121704937-121704938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12527395	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs1555772	0.83[ASN][1000 genomes]
rs17083457	0.85[AMR][1000 genomes]
rs17083471	0.85[AMR][1000 genomes]
rs1925220	1.00[ASN][1000 genomes]
rs1925221	0.99[ASN][1000 genomes]
rs2147709	0.86[ASN][1000 genomes]
rs56140776	0.87[ASN][1000 genomes]
rs56785883	1.00[ASN][1000 genomes]
rs60895181	0.85[AMR][1000 genomes]
rs61047908	1.00[ASN][1000 genomes]
rs67199580	0.99[ASN][1000 genomes]
rs67612546	0.89[ASN][1000 genomes]
rs68043442	0.99[ASN][1000 genomes]
rs68192738	0.89[ASN][1000 genomes]
rs73530206	1.00[ASN][1000 genomes]
rs9482154	0.99[ASN][1000 genomes]
rs9482155	0.99[ASN][1000 genomes]
rs9482156	1.00[ASN][1000 genomes]
rs9490219	0.99[ASN][1000 genomes]
rs9490220	0.99[ASN][1000 genomes]
rs9490221	0.99[ASN][1000 genomes]
rs9490222	0.99[ASN][1000 genomes]
rs9490225	0.99[ASN][1000 genomes]
rs9490226	0.99[ASN][1000 genomes]
rs9490228	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv969324	chr6:121703134-121711366	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121698800-121705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121702600-121706000	Enhancers	Fetal Intestine Large	intestine
3	chr6:121702600-121706000	Enhancers	Fetal Intestine Small	intestine
4	chr6:121703000-121705600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr6:121703800-121705600	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr6:121704000-121705600	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:121704400-121705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:121704600-121705000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:121704600-121705000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:121704800-121705200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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