Variant report
| Variant | rs9490228 |
|---|---|
| Chromosome Location | chr6:121707449-121707450 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs12527395 | 0.85[ASN][1000 genomes] |
| rs1555772 | 0.87[ASN][1000 genomes] |
| rs1925220 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs1925221 | 0.97[ASN][1000 genomes] |
| rs2147709 | 0.87[ASN][1000 genomes] |
| rs56140776 | 0.85[ASN][1000 genomes] |
| rs56785883 | 0.96[ASN][1000 genomes] |
| rs58735295 | 0.96[ASN][1000 genomes] |
| rs61047908 | 0.96[ASN][1000 genomes] |
| rs67199580 | 0.97[ASN][1000 genomes] |
| rs67612546 | 0.90[ASN][1000 genomes] |
| rs68043442 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs68192738 | 0.90[ASN][1000 genomes] |
| rs6903232 | 0.81[ASN][1000 genomes] |
| rs73530206 | 0.96[ASN][1000 genomes] |
| rs9482154 | 0.97[ASN][1000 genomes] |
| rs9482155 | 0.97[ASN][1000 genomes] |
| rs9482156 | 0.96[ASN][1000 genomes] |
| rs9490219 | 0.97[ASN][1000 genomes] |
| rs9490220 | 0.97[ASN][1000 genomes] |
| rs9490221 | 0.97[ASN][1000 genomes] |
| rs9490222 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs9490225 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs9490226 | 0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530527 | chr6:121298528-121789855 | ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv830789 | chr6:121581450-121732320 | Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv969324 | chr6:121703134-121711366 | Enhancers Weak transcription | TF binding regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:121706000-121709600 | Weak transcription | Fetal Intestine Large | intestine |
| 2 | chr6:121706000-121710000 | Weak transcription | Fetal Intestine Small | intestine |
