Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121634384..121637118-chr6:121723532..121726369,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085172	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12527395	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12528003	0.80[AFR][1000 genomes]
rs1555772	0.85[ASN][1000 genomes]
rs17083610	0.81[JPT][hapmap]
rs1925220	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2038836	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2038837	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147709	0.94[ASN][1000 genomes]
rs4945685	0.81[EUR][1000 genomes]
rs4946568	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs5012746	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56308178	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67612546	0.91[ASN][1000 genomes]
rs68192738	0.91[ASN][1000 genomes]
rs7740324	0.81[JPT][hapmap]
rs7740467	0.80[JPT][hapmap]
rs7775464	0.81[EUR][1000 genomes]
rs9482160	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9490222	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9490225	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9490226	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9490228	0.81[ASN][1000 genomes]
rs9490238	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9490239	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:121721600-121726400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:121722000-121726000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:121722200-121725000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:121722200-121726600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:121724400-121727400	Enhancers	Fetal Intestine Large	intestine

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