Variant report

Variant	rs7775464
Chromosome Location	chr6:121720097-121720098
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085172	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12526300	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12528003	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12529908	0.93[ASN][1000 genomes]
rs1925222	0.82[ASN][1000 genomes]
rs2038836	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2038837	0.83[EUR][1000 genomes]
rs4376375	0.82[ASN][1000 genomes]
rs4551206	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4945685	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4945686	0.98[ASN][1000 genomes]
rs4946568	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5012746	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66584012	0.82[ASN][1000 genomes]
rs67127305	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs67418017	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67502032	0.82[ASN][1000 genomes]
rs68096413	0.82[ASN][1000 genomes]
rs6903232	0.81[EUR][1000 genomes]
rs6908897	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6913498	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6930098	0.82[ASN][1000 genomes]
rs7738656	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7767249	0.93[ASN][1000 genomes]
rs7775586	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401398	0.82[ASN][1000 genomes]
rs9482157	0.82[ASN][1000 genomes]
rs9482160	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9490232	0.88[ASN][1000 genomes]
rs9490238	0.83[EUR][1000 genomes]
rs9490239	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121717000-121720200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:121717000-121722000	Enhancers	Fetal Intestine Large	intestine
3	chr6:121717600-121726600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121719000-121722200	Enhancers	Fetal Intestine Small	intestine
5	chr6:121719800-121721000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:121720000-121720200	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:121720000-121721600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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